- Gene expression (x)
- Whaley, Adam M. (x)
- Search results
Search results
- Title
- Cell-specific cis-natural antisense transcripts (cis-NATs) in the sperm and the pollen vegetative cells of Arabidopsis thaliana
- Author
- Loraine, Ann, Qin, Peng, McCormick, Sheila
- Date Created
- 2018
- Subjects--Topical
- Gene expression, Pollen
- Description
- Background: cis-NATs (cis-natural antisense transcripts ) are transcribed from opposite strands of adjacent genes and have been shown to regulate gene expression by generating small RNAs from the overlapping region. cis-NATs are important for plan...
- Title
- Characterization of the cytokinin-responsive transcriptome in rice
- Author
- Loraine, Ann, Raines, Tracy, Blakley, Ivory, Kieber, Joseph J.
- Date Created
- 2016
- Subjects--Topical
- Gene expression, Cytokinins
- Description
- Background: Cytokinin activates transcriptional cascades important for development and the responses to biotic and abiotic stresses. Most of what is known regarding cytokinin-regulated gene expression comes from studies of the dicotyledonous plant...
- Title
- Commonality of functional annotation : a method for prioritization of candidate genes from genome-wide linkage studies
- Author
- Loraine, Ann, Shriner, Daniel, Baye, Tesfaye M., Padilla, Miguel A.
- Date Created
- 2008
- Subjects--Topical
- Gene expression, Alzheimer's disease
- Description
- Linkage studies of complex traits frequently yield multiple linkage regions covering hundreds of genes. Testing each candidate gene from every region is prohibitively expensive and computational methods that simplify this process would benefit gen...
- Title
- Consistency analysis of redundant probe sets on Affymetrix three-prime expression arrays and applications to differential mRNA processing
- Author
- Loraine, Ann, Cui, Xiangqin
- Date Created
- 2009
- Subjects--Topical
- Gene expression, Nucleic acids
- Description
- Affymetrix three-prime expression microarrays contain thousands of redundant probe sets that interrogate different regions of the same gene. Differential expression analysis methods rarely consider probe redundancy, which can lead to inaccurate in...
- Title
- Daily cycle in oxygen consumption by the sea anemone Nematostella vectensis Stephenson
- Author
- Reitzel, Adam M., Maas, Amy E., Jones, Ian T.
- Date Created
- 2016
- Subjects--Topical
- Gene expression, Biology
- Description
- In bilaterian animals, the circadian clock is intimately involved in regulating energetic metabolism. Although cnidarians exhibit diel behavioral rhythms including cycles in locomotor activity, tentacle extension and spawning, daily cycles in cnid...
- Title
- Decoupling behavioral and transcriptional responses to color in an eyeless cnidarian
- Author
- Reitzel, Adam M., Leach, Whitney
- Subjects--Topical
- Gene expression, Circadian rhythms
- Description
- Background Animals have specific molecular, physiological, and behavioral responses to light that are influenced by wavelength and intensity. Predictable environmental changes – predominantly solar and lunar cycles – drive endogenous daily oscilla...
- Title
- Developmental and light-entrained expression of melatonin and its relationship to the circadian clock in the sea anemone Nematostella vectensis
- Author
- Reitzel, Adam M., Peres, Rafael, Passamaneck, Yale
- Date Created
- 2014
- Subjects--Topical
- Gene expression, Biology
- Description
- Background: The primary hormone of the vertebrate pineal gland, melatonin, has been identified broadly throughout the eukaryotes. While the role for melatonin in cyclic behavior via interactions with the circadian clock has only been reported in v...
- Title
- Diel patterning in the bacterial community associated with the sea anemone Nematostella vectensis
- Author
- Reitzel, Adam M., Leach, Whitney B., Carrier, Tyler J.
- Date Created
- 2019
- Subjects--Topical
- Gene expression, Biology
- Description
- Microbes can play an important role in the physiology of animals by providing essential nutrients, inducing immune pathways, and influencing the specific species that compose the microbiome through competitive or facilitatory interactions. The com...
- Title
- Genetic variation at aryl hydrocarbon receptor (AHR) loci in populations of Atlantic killifish (Fundulus heteroclitus) inhabiting polluted and reference habitats
- Author
- Reitzel, Adam M., Karchner, Sibel I., Franks, Diana G.
- Date Created
- 2014
- Subjects--Topical
- Gene expression, Biology
- Description
- Background: The non-migratory killifish Fundulus heteroclitus inhabits clean and polluted environments interspersed throughout its range along the Atlantic coast of North America. Several populations of this species have successfully adapted to en...
- Title
- Linear mitochondrial genome in Anthozoa (Cnidaria) : a case study in Ceriantharia
- Author
- Reitzel, Adam M., Stampar, Sergio N., Macrander, Jason
- Date Created
- 2019
- Subjects--Topical
- Gene expression, Biology
- Description
- Sequences and structural attributes of mitochondrial genomes have played a critical role in the clarification of relationships among Cnidaria, a key phylum of early-diverging animals. Among the major lineages of Cnidaria, Ceriantharia (tube anemon...
- Title
- Many rice genes are differentially spliced between roots and shoots but cytokinin has minimal effect on splicing
- Author
- Loraine, Ann, Freese, Nowlan H., Estrada, April, Blakley, Ivory
- Date Created
- 2019
- Subjects--Topical
- Gene expression
- Description
- Alternatively spliced genes produce multiple spliced isoforms, called transcript variants. In differential alternative splicing, transcript variant abundance differs across sample types. Differential alternative splicing is common in animal system...
- Title
- Microbial diversity and activity in the Nematostella vectensis holobiont : insights from 16S rRNA gene sequencing, isolate genomes, and a pilot-scale survey of gene expression
- Author
- Reitzel, Adam M., Har, Jia Y., Helbig, Tim
- Date Created
- 2015
- Subjects--Topical
- Gene expression, Biology
- Description
- We have characterized the molecular and genomic diversity of the microbiota of the starlet sea anemone Nematostella vectensis, a cnidarian model for comparative developmental and functional biology and a year-round inhabitant of temperate salt mar...
- Title
- Prevalence of alternative splicing choices in Arabidopsis thaliana
- Author
- Loraine, Ann, English, Adam C., Patel, Ketan S.
- Date Created
- 2010
- Subjects--Topical
- Gene expression, Nucleic acids
- Description
- Background: Around 14% of protein-coding genes of Arabidopsis thaliana genes from the TAIR9 genome release are annotated as producing multiple transcript variants through alternative splicing. However, for most alternatively spliced genes in Arabi...
- Title
- Transcriptome profiling of a beach-adapted wild legume for dissecting novel mechanisms of salinity tolerance
- Author
- Song, Bao-Hua, Zhang, Hengyou, Zuelsdorf, Christine, Penneys, Darin
- Subjects--Topical
- Plant ecology, Gene expression
- Description
- Strophostyles helvola is a close relative to common bean (Phaseolus vulgaris) and inhabits both coastal and non-coastal regions in North America. However, the mechanism of saline adaptation in S. helvola remains unclear. A transcriptome profiling ...
- Title
- Using Nematostella vectensis to study the interactions between genome, epigenome, and bacteria in a changing environment
- Author
- Reitzel, Adam M., Fraune, Sebastian, Foret, Sylvain
- Date Created
- 2016
- Subjects--Topical
- Gene expression, Biology
- Description
- The phenotype of an animal cannot be explained entirely by its genes. It is now clear that factors other than the genome contribute to the ecology and evolution of animals. Two fundamentally important factors are the associated microbiota and epig...