Search results | J. Murrey Atkins Library

Title: A comparison of transgenic and wild type soybean seeds : analysis of transcriptome profiles using RNA-Seq
Author: Loraine, Ann, Lambirth, Kevin C., Whaley, Adam M., Piller, Kenneth J.
Date Created: 2015
Subjects--Topical: Gene expression, Biotechnology
Description: Background: Soybean (Glycine max) has been bred for thousands of years to produce seeds rich in protein for human and animal consumption, making them an appealing bioreactor for producing valuable recombinant proteins at high levels. However, the ...

Title: Characterization of the cytokinin-responsive transcriptome in rice
Author: Loraine, Ann, Raines, Tracy, Blakley, Ivory, Kieber, Joseph J.
Date Created: 2016
Subjects--Topical: Gene expression, Cytokinins
Description: Background: Cytokinin activates transcriptional cascades important for development and the responses to biotic and abiotic stresses. Most of what is known regarding cytokinin-regulated gene expression comes from studies of the dicotyledonous plant...

Title: Commonality of functional annotation : a method for prioritization of candidate genes from genome-wide linkage studies
Author: Loraine, Ann, Shriner, Daniel, Baye, Tesfaye M., Padilla, Miguel A.
Date Created: 2008
Subjects--Topical: Gene expression, Alzheimer's disease
Description: Linkage studies of complex traits frequently yield multiple linkage regions covering hundreds of genes. Testing each candidate gene from every region is prohibitively expensive and computational methods that simplify this process would benefit gen...

Title: Consistency analysis of redundant probe sets on Affymetrix three-prime expression arrays and applications to differential mRNA processing
Author: Loraine, Ann, Cui, Xiangqin
Date Created: 2009
Subjects--Topical: Gene expression, Nucleic acids
Description: Affymetrix three-prime expression microarrays contain thousands of redundant probe sets that interrogate different regions of the same gene. Differential expression analysis methods rarely consider probe redundancy, which can lead to inaccurate in...

Title: Decoupling behavioral and transcriptional responses to color in an eyeless cnidarian
Author: Reitzel, Adam M., Leach, Whitney
Subjects--Topical: Gene expression, Circadian rhythms
Description: Background Animals have specific molecular, physiological, and behavioral responses to light that are influenced by wavelength and intensity. Predictable environmental changes – predominantly solar and lunar cycles – drive endogenous daily oscilla...

Title: Many rice genes are differentially spliced between roots and shoots but cytokinin has minimal effect on splicing
Author: Loraine, Ann, Freese, Nowlan H., Estrada, April, Blakley, Ivory
Date Created: 2019
Subjects--Topical: Gene expression
Description: Alternatively spliced genes produce multiple spliced isoforms, called transcript variants. In differential alternative splicing, transcript variant abundance differs across sample types. Differential alternative splicing is common in animal system...

Title: Prevalence of alternative splicing choices in Arabidopsis thaliana
Author: Loraine, Ann, English, Adam C., Patel, Ketan S.
Date Created: 2010
Subjects--Topical: Gene expression, Nucleic acids
Description: Background: Around 14% of protein-coding genes of Arabidopsis thaliana genes from the TAIR9 genome release are annotated as producing multiple transcript variants through alternative splicing. However, for most alternatively spliced genes in Arabi...

Title: Transcriptome profiling of a beach-adapted wild legume for dissecting novel mechanisms of salinity tolerance
Author: Song, Bao-Hua, Zhang, Hengyou, Zuelsdorf, Christine, Penneys, Darin
Subjects--Topical: Plant ecology, Gene expression
Description: Strophostyles helvola is a close relative to common bean (Phaseolus vulgaris) and inhabits both coastal and non-coastal regions in North America. However, the mechanism of saline adaptation in S. helvola remains unclear. A transcriptome profiling ...