Search results
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Title
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A comparison of transgenic and wild type soybean seeds : analysis of transcriptome profiles using RNA-Seq
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Author
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Loraine, Ann, Lambirth, Kevin C., Whaley, Adam M., Piller, Kenneth J.
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Date Created
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2015
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Subjects--Topical
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Gene expression, Biotechnology
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Description
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Background: Soybean (Glycine max) has been bred for thousands of years to produce seeds rich in protein for human and animal consumption, making them an appealing bioreactor for producing valuable recombinant proteins at high levels. However, the ...
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Title
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Analysis of pollen-specific alternative splicing in Arabidopsis thaliana via semi-quantitative PCR
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Author
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Loraine, Ann, Estrada, April, Freese, Nowlan H., Blakley, Ivory
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Date Created
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2015
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Subjects--Topical
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Bioinformatics, Pollen, Nucleic acids
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Description
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Alternative splicing enables a single gene to produce multiple mRNA isoforms by varying splice site selection. In animals, alternative splicing of mRNA isoforms between cell types is widespread and supports cellular differentiation. In plants, at ...
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Title
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Arabidopsis bioinformatics resources : the current state, challenges, and priorities for the future
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Author
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Loraine, Ann, Doherty, Colleen, Friesner, Joanna, Gregory, Brian
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Date Created
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2019
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Subjects--Topical
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Bioinformatics, Arabidopsis thaliana
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Description
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Effective research, education, and outreach efforts by the Arabidopsis thaliana community, as well as other scientific communities that depend on Arabidopsis resources, depend vitally on easily available and publicly-shared resources. These resour...
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Title
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Characterization of the cytokinin-responsive transcriptome in rice
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Author
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Loraine, Ann, Raines, Tracy, Blakley, Ivory, Kieber, Joseph J.
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Date Created
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2016
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Subjects--Topical
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Gene expression, Cytokinins
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Description
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Background: Cytokinin activates transcriptional cascades important for development and the responses to biotic and abiotic stresses. Most of what is known regarding cytokinin-regulated gene expression comes from studies of the dicotyledonous plant...
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Title
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Prevalence of alternative splicing choices in Arabidopsis thaliana
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Author
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Loraine, Ann, English, Adam C., Patel, Ketan S.
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Date Created
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2010
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Subjects--Topical
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Gene expression, Nucleic acids
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Description
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Background: Around 14% of protein-coding genes of Arabidopsis thaliana genes from the TAIR9 genome release are annotated as producing multiple transcript variants through alternative splicing. However, for most alternatively spliced genes in Arabi...
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Title
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Revisiting the use of graph centrality models in biological pathway analysis
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Author
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Loraine, Ann, Mostafavi, M. Taghi, Yeganeh, Pourya Naderi, Richardson, Christine
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Date Created
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2020
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Subjects--Topical
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Biological systems, Graph theory
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Description
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The use of graph theory models is widespread in biological pathway analyses as it is often desired to evaluate the position of genes and proteins in their interaction networks of the biological systems. In this article, we argue that the common st...