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A new strategy to infer circularity applied to four new complete frog mitogenomes
Title
A new strategy to infer circularity applied to four new complete frog mitogenomes
Author
Machado, Denis Jacob, Janies, Daniel, Brouwer, Cory, Grant, Taran
Date Created
2018
Subjects--Topical
Genomics, Amphibians, Bioinformatics
Description
We applied a novel strategy to infer sequence circularity and complete assembly of four mitochondrial genomes (mitogenomes) of the frog families Bufonidae (Melanophryniscus moreirae), Dendrobatidae (Hyloxalus subpunctatus and Phyllobates terribili...
Arboviruses: The hidden path of an imminent threat
Title
Arboviruses: The hidden path of an imminent threat
Author
de Bernardi Schneider, Adriano
Date Created
2018
Subjects--Topical
Virology, Bioinformatics, Epidemiology
Description
Arboviruses are a grade of viruses carried by arthropods, which have been in the headlines due to recent epidemics. Members of this grade are the families Flaviviridae which includes Zika (ZIKV), Dengue (DENV), Yellow Fever (YFV), among other viru...
Echinoderm Transcriptomics
Title
Echinoderm Transcriptomics
Author
Linchangco, Gregorio
Date Created
2018
Subjects--Topical
Bioinformatics
Description
Tissue regeneration and biomineralization are expressed to a diverse extent across metazoans and their life stages. The potential for repair and regrowth in adult stages varies widely within phyla, class and species. For instance, few adult human ...
INVESTIGATING THE GENETIC BASIS OF GENE EXPRESSION USING EQTL TECHNIQUES
Title
INVESTIGATING THE GENETIC BASIS OF GENE EXPRESSION USING EQTL TECHNIQUES
Author
Quitadamo, Andrew
Date Created
2018
Subjects--Topical
Bioinformatics
Description
With advances in genome sequencing technology, datasets with large sample sizes can be generated relatively quickly and cheaply, especially compared to the past decade or so. We can utilize this data to analyze the associations between genetic var...
New Algorithms for Protein Structure Analysis: From Nonparametric Density Estimation to Characterization of Molecular Volume Spatial Distributions
Title
New Algorithms for Protein Structure Analysis: From Nonparametric Density Estimation to Characterization of Molecular Volume Spatial Distributions
Author
Farmer, Jenny
Date Created
2018
Subjects--Topical
Bioinformatics, Biophysics, Physics
Description
The Flexibility and Stability Test (FAST) is a C++ class library designed in the early 2000’s to execute free energy decomposition and reconstitution operations applied to protein structures. The library has been substantially expanded to include ...
The Semantics of Diet and Health: Knowledge Based Discovery Through Data Integration, Text Mining, and Network Analysis
Title
The Semantics of Diet and Health: Knowledge Based Discovery Through Data Integration, Text Mining, and Network Analysis
Author
Linchangco, Richard
Date Created
2018
Subjects--Topical
Bioinformatics
Description
Consumption of fruits and vegetables has been linked to a reduced risk of cancer and other chronic diseases, but the molecular mechanisms supporting these connections remain largely unknown. A wealth of association data linking components of a pla...