Search results
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Title
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High throughput nonparametric probability density estimation
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Author
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Jacobs, Donald J., Farmer, Jenny
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Date Created
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2018
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Subjects--Topical
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Statistics, Probabilities
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Description
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In high throughput applications, such as those found in bioinformatics and finance, it is important to determine accurate probability distribution functions despite only minimal information about data characteristics, and without using human subje...
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Title
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MATLAB tool for probability density assessment and nonparametric estimation
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Author
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Jacobs, Donald J., Farmer, Jenny
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Date Created
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2022
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Subjects--Topical
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Statistics, Entropy
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Description
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A MATLAB function is presented for nonparametric probability density estimation, based on an iterative method that employs the principle of maximum entropy and characteristic properties of single order statistics. Featuring a robust and adaptive d...
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Title
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Statistical measures to quantify similarity between molecular dynamics simulation trajectories
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Author
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Jacobs, Donald J., Farmer, Jenny, Kanwal, Fareeha, Nikulsin, Nikita
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Date Created
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2017
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Subjects--Topical
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Molecular dynamics, Statistics
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Description
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Molecular dynamics simulation is commonly employed to explore protein dynamics. Despite the disparate timescales between functional mechanisms and molecular dynamics (MD) trajectories, functional differences are often inferred from differences in ...
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Title
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Universal sample size invariant measures for uncertainty quantification in density estimation
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Author
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Jacobs, Donald J., Farmer, Jenny, Merino, Zach, Merino, Zach
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Date Created
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2019
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Subjects--Topical
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Statistics, Entropy
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Description
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Previously, we developed a high throughput non-parametric maximum entropy method (PLOS ONE, 13(5): e0196937, 2018) that employs a log-likelihood scoring function to characterize uncertainty in trial probability density estimates through a scaled q...