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Changing of the genomic pattern of Salmonella enteritidis strains isolated in Brazil over a 48 year-period revealed by whole genome SNP analyses
Title
Changing of the genomic pattern of Salmonella enteritidis strains isolated in Brazil over a 48 year-period revealed by whole genome SNP analyses
Author
Janies, Daniel
Date Created
2018
Subjects--Topical
Genomics, Salmonella
Description
Salmonella Enteritidis became the main serovar isolated from gastroenteritis cases in Brazil after the 90's. In this study we used whole genome sequence analysis to determine the phylogenetic relationships among a collection of strains isolated in...
Genomic alterations and abnormal expression of APE2 in multiple cancers
Title
Genomic alterations and abnormal expression of APE2 in multiple cancers
Author
Yan, Shan, Jensen, Katherine A., Shi, Xinghua
Subjects--Topical
Cancer--Genetic aspects, DNA repair
Description
Although APE2 plays essential roles in base excision repair and ATR-Chk1 DNA damage response (DDR) pathways, it remains unknown how the APE2 gene is altered in the human genome and whether APE2 is differentially expressed in cancer patients. Here,...
Molecular function recognition by supervised projection pursuit machine learning
Title
Molecular function recognition by supervised projection pursuit machine learning
Author
Jacobs, Donald J., Grear, Tyler, Avery, Chris, Patterson, John
Date Created
2021
Subjects--Topical
Molecular biology, Pharmaceutical chemistry
Description
Identifying mechanisms that control molecular function is a significant challenge in pharmaceutical science and molecular engineering. Here, we present a novel projection pursuit recurrent neural network to identify functional mechanisms in the co...
Salt tolerance response revealed by RNA-Seq in a diploid halophytic wild relative of sweet potato
Title
Salt tolerance response revealed by RNA-Seq in a diploid halophytic wild relative of sweet potato
Author
Loraine, Ann, Luo, Yan, Reid, Robert, Song, Bao-Hua
Date Created
2017
Subjects--Topical
Genomics, Crop improvement
Description
Crop wild relatives harbor exotic and novel genetic resources, which hold great potential for crop improvement. Ipomoea imperati is a wild diploid relative of sweet potato with the capability of high salinity tolerance. We compared the transcripto...