Search results
-
-
Title
-
A new strategy to infer circularity applied to four new complete frog mitogenomes
-
Author
-
Machado, Denis Jacob, Janies, Daniel, Brouwer, Cory, Grant, Taran
-
Date Created
-
2018
-
Subjects--Topical
-
Genomics, Amphibians, Bioinformatics
-
Description
-
We applied a novel strategy to infer sequence circularity and complete assembly of four mitochondrial genomes (mitogenomes) of the frog families Bufonidae (Melanophryniscus moreirae), Dendrobatidae (Hyloxalus subpunctatus and Phyllobates terribili...
-
-
Title
-
Active Notch signaling is required for arm regeneration in a brittle star
-
Author
-
Janies, Daniel, Machado, Denis Jacob, Reid, Robert
-
Date Created
-
2020
-
Subjects--Topical
-
Genomics, Biology
-
Description
-
Cell signaling pathways play key roles in coordinating cellular events in development. The Notch signaling pathway is highly conserved across all multicellular animals and is known to coordinate a multitude of diverse cellular events, including pr...
-
-
Title
-
Comparative phylogenetic studies on Schistosoma japonicum and its snail intermediate host Oncomelania hupensis : origins, dispersal and coevolution
-
Author
-
Attwood, Stephen W., Ibaraki, Motomu, Saitoh, Yasuhide, Janies, Daniel
-
Subjects--Topical
-
Parasites, Coevolution, Public health
-
Description
-
Schistosoma japonicum causes major public health problems in China and the Philippines; this parasite, which is transmitted by freshwater snails of the species Oncomelania hupen- sis, causes the disease intestinal schistosomiasis in humans and cat...
-
-
Title
-
Content and sentiment surveillance (CSI) : A critical component for modeling modern epidemics
-
Author
-
Janies, Daniel, Chen, Shi, Zhang, Dongsong
-
Date Created
-
2023
-
Subjects--Topical
-
Communicable diseases, Biology
-
Description
-
Comprehensive surveillance systems are the key to provide accurate data for effective modeling. Traditional symptom-based case surveillance has been joined with recent genomic, serologic, and environment surveillance to provide more integrated dis...
-
-
Title
-
EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms
-
Author
-
Janies, Daniel, Witter, Zachary, Linchangco, Gregorio V., Jr.
-
Date Created
-
2016
-
Subjects--Topical
-
Genomics, Biology
-
Description
-
Background: One of our goals for the echinoderm tree of life project (http://echinotol.org) is to identify orthologs suitable for phylogenetic analysis from next-generation transcriptome data. The current dataset is the largest assembled for echin...
-
-
Title
-
FLAVi : an enhanced annotator for viral genomes of Flaviviridae
-
Author
-
Machado, Denis Jacob, Schneider, Adriano, Guirales, Sayal, Janies, Daniel
-
Subjects--Topical
-
Viruses, Phylogeny
-
Description
-
Responding to the ongoing and severe public health threat of viruses of the family Flaviviridae, including dengue, hepatitis C, West Nile, yellow fever, and Zika, demands a greater understanding of how these viruses emerge and spread. Updated phyl...
-
-
Title
-
Integration of phylogenomics and molecular modeling reveals lineage-specific diversification of toxins in scorpions
-
Author
-
Janies, Daniel, Rush, Nathaniel, Witter, Zachary, Williams, John
-
Date Created
-
2018
-
Subjects--Topical
-
Genomics, Biology
-
Description
-
Scorpions have evolved a variety of toxins with a plethora of biological targets, but characterizing their evolution has been limited by the lack of a comprehensive phylogenetic hypothesis of scorpion relationships grounded in modern, genome-scale...
-
-
Title
-
Patch dynamics modeling framework from pathogens' perspective : Unified and standardized approach for complicated epidemic systems
-
Author
-
Janies, Daniel, Chen, Shi, Lo, Eugenia, Dulin, Michael
-
Date Created
-
2020
-
Subjects--Topical
-
Communicable diseases, Biology
-
Description
-
Mathematical models are powerful tools to investigate, simulate, and evaluate potential interventions for infectious diseases dynamics. Much effort has focused on the Susceptible-Infected-Recovered (SIR)-type compartment models. These models consi...
-
-
Title
-
Phylogeny of echinoderm hemoglobins
-
Author
-
Janies, Daniel, Linchangco, Gregorio V., Jr.
-
Date Created
-
2015
-
Subjects--Topical
-
Genomics, Biology
-
Description
-
Background Recent genomic information has revealed that neuroglobin and cytoglobin are the two principal lineages of vertebrate hemoglobins, with the latter encompassing the familiar myoglobin and alpha-globin/beta-globin tetramer hemoglobin, and ...
-
-
Title
-
Twinkle twinkle brittle star : the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research
-
Author
-
Janies, Daniel, Machado, Denis Jacob, Reid, Robert, Kofsky, Janice
-
Date Created
-
2022
-
Subjects--Topical
-
Genomics, Biology
-
Description
-
Background Echinoderms are established models in experimental and developmental biology, however genomic resources are still lacking for many species. Here, we present the draft genome of Ophioderma brevispinum, an emerging model organism in the f...
-
-
Title
-
Updated phylogeny of chikungunya virus suggests lineage-specific RNA architecture
-
Author
-
Janies, Daniel
-
Date Created
-
2019
-
Subjects--Topical
-
Communicable diseases, Biology
-
Description
-
Chikungunya virus (CHIKV), a mosquito-borne alphavirus of the family Togaviridae, has recently emerged in the Americas from lineages from two continents: Asia and Africa. Historically, CHIKV circulated as at least four lineages worldwide with both...