- Marcusse, Molly E. (x)
- articles (x)
- Nucleic acids (x)
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Search results
- Title
- Analysis of pollen-specific alternative splicing in Arabidopsis thaliana via semi-quantitative PCR
- Author
- Loraine, Ann, Estrada, April, Freese, Nowlan H., Blakley, Ivory
- Date Created
- 2015
- Subjects--Topical
- Bioinformatics, Pollen, Nucleic acids
- Description
- Alternative splicing enables a single gene to produce multiple mRNA isoforms by varying splice site selection. In animals, alternative splicing of mRNA isoforms between cell types is widespread and supports cellular differentiation. In plants, at ...
- Title
- Artificial immune cell, AI-cell, a new tool to predict interferon production by peripheral blood monocytes in response to nucleic acid nanoparticles
- Author
- Afonin, Kirill A., Chandler, Morgan, Halman, Justin
- Date Created
- 2022
- Subjects--Topical
- Nucleic acids, Chemistry
- Description
- Nucleic acid nanoparticles, or NANPs, rationally designed to communicate with the human immune system, can offer innovative therapeutic strategies to overcome the limitations of traditional nucleic acid therapies. Each set of NANPs is unique in th...
- Title
- Biomotors, viral assembly, and rna nanobiotechnology: current achievements and future directions
- Author
- Afonin, Kirill A., Rolband, Lewis
- Date Created
- 2022
- Subjects--Topical
- Nucleic acids, Chemistry
- Description
- The International Society of RNA Nanotechnology and Nanomedicine (ISRNN) serves to further the development of a wide variety of functional nucleic acids and other related nanotechnology platforms. To aid in the dissemination of the most recent adv...
- Title
- Broccoli fluorets : split aptamers as a user-friendly fluorescent toolkit for dynamic RNA nanotechnology
- Author
- Afonin, Kirill A., Chandler, Morgan, Halman, Justin
- Date Created
- 2018
- Subjects--Topical
- Nucleic acids, Chemistry
- Description
- RNA aptamers selected to bind fluorophores and activate their fluorescence offer a simple and modular way to visualize native RNAs in cells. Split aptamers which are inactive until the halves are brought within close proximity can become useful fo...
- Title
- Change in lipofectamine carrier as a tool to fine-tune immunostimulation of nucleic acid nanoparticles
- Author
- Afonin, Kirill A., Newton, Hannah S., Xu, Jie
- Date Created
- 2023
- Subjects--Topical
- Nucleic acids, Chemistry
- Description
- Nucleic acid nanoparticles (NANPs) require a carrier to allow for their intracellular delivery to immune cells. Cytokine production, specifically type I and III interferons, allows for reliable monitoring of the carrier effect on NANP immunostimul...
- Title
- Characterization of cationic bolaamphiphile vesicles for sirna delivery into tumors and brain
- Author
- Afonin, Kirill A., Kim, Taejin, Gupta, Kshitij
- Date Created
- 2020
- Subjects--Topical
- Nucleic acids, Chemistry
- Description
- Small interfering RNAs (siRNAs) are potential therapeutic substances due to their gene silencing capability as exemplified by the recent approval by the US Food and Drug Administration (FDA) of the first siRNA therapeutic agent (patisiran). Howeve...
- Title
- ComparePD : improving protein–DNA complex model comparison with hydrogen bond energy-based metrics
- Author
- Guo, Jun-tao, Malik, Fareeha Kanwal
- Date Created
- 2023
- Subjects--Topical
- DNA, Nucleic acids
- Description
- Computational modeling of protein–DNA complex structures has important implications in biomedical applications such as structure-based, computer aided drug design. A key step in developing methods for accurate modeling of protein–DNA complexes is ...
- Title
- Consistency analysis of redundant probe sets on Affymetrix three-prime expression arrays and applications to differential mRNA processing
- Author
- Loraine, Ann, Cui, Xiangqin
- Date Created
- 2009
- Subjects--Topical
- Gene expression, Nucleic acids
- Description
- Affymetrix three-prime expression microarrays contain thousands of redundant probe sets that interrogate different regions of the same gene. Differential expression analysis methods rarely consider probe redundancy, which can lead to inaccurate in...
- Title
- DNA-templated fluorescent silver nanoclusters inhibit bacterial growth while being non-toxic to mammalian cells
- Author
- Afonin, Kirill A., Chandler, Morgan, Rolband, Lewis
- Date Created
- 2021
- Subjects--Topical
- Nucleic acids, Chemistry
- Description
- Silver has a long history of antibacterial effectiveness. The combination of atomically precise metal nanoclusters with the field of nucleic acid nanotechnology has given rise to DNA-templated silver nanoclusters (DNA-AgNCs) which can be engineere...
- Title
- Editorial for the special issue on nucleic acid architectures for therapeutics, diagnostics, devices and materials
- Author
- Afonin, Kirill A., Halman, Justin
- Date Created
- 2019
- Subjects--Topical
- Nucleic acids, Chemistry
- Title
- Exosome mediated delivery of functional nucleic acid nanoparticles (NANPs)
- Author
- Afonin, Kirill A., Ke, Weina
- Date Created
- 2020
- Subjects--Topical
- Nucleic acids, Chemistry
- Description
- RNAi-based technologies have shown biomedical potential; however, safe and efficient delivery of RNA remains a barrier for their broader clinical applications. Nucleic acid nanoparticles (NANPs) programmed to self-assemble and organize multiple th...
- Title
- Expanding structural space for immunomodulatory nucleic acid nanoparticles (NANPs) via spatial arrangement of their therapeutic moieties
- Author
- Afonin, Kirill A., Chandler, Morgan, Rolband, Lewis
- Date Created
- 2022
- Subjects--Topical
- Nucleic acids, Chemistry
- Description
- Different therapeutic nucleic acids (TNAs) can be unified in a single structure by their elongation with short oligonucleotides designed to self-assemble into nucleic acid nanoparticles (NANPs). With this approach, therapeutic cocktails with preci...
- Title
- First step towards larger DNA-based assemblies of fluorescent silver nanoclusters: template design and detailed characterization of optical properties
- Author
- Afonin, Kirill A., Shevchenko, Oleg
- Date Created
- 2019
- Subjects--Topical
- Nucleic acids, Chemistry
- Description
- Besides being a passive carrier of genetic information, DNA can also serve as an architecture template for the synthesis of novel fluorescent nanomaterials that are arranged in a highly organized network of functional entities such as fluorescent ...
- Title
- Functionally-interdependent shape-switching nanoparticles with controllable properties
- Author
- Halman, Justin, Khisamutdinov, Emil F., Afonin, Kirill A., Satterwhite, Emily, Roark, Brandon, Chandler, Morgan, Ivanina, Anna, Viard, Mathias, Bindewald, Eckart, Kasprzak, Wojciech K., Panigaj, Martin, Bui, My N., Lu, Jacob S., Miller, Johann, Shapiro, Bruce A., Dobrovolskaia, Marina A.
- Subjects--Topical
- Nucleic acids, Nanotechnology
- Description
- We introduce a new concept that utilizes cognate nucleic acid nanoparticles which are fully complementary and functionally-interdependent to each other. In the described approach, the physical interaction between sets of designed nanoparticles ini...
- Title
- Functionally-interdependent shape-switching nanoparticles with controllable properties
- Author
- Afonin, Kirill A., Halman, Justin, Chandler, Morgan
- Date Created
- 2017
- Subjects--Topical
- Nucleic acids, Chemistry
- Description
- We introduce a new concept that utilizes cognate nucleic acid nanoparticles which are fully complementary and functionally-interdependent to each other. In the described approach, the physical interaction between sets of designed nanoparticles ini...
- Title
- Induction of cytokines by nucleic acid nanoparticles (NANPs) depends on the type of delivery carrier
- Author
- Afonin, Kirill A., Chandler, Morgan, Avila, Yelixza I.
- Date Created
- 2021
- Subjects--Topical
- Nucleic acids, Chemistry
- Description
- Recent insights into the immunostimulatory properties of nucleic acid nanoparticles (NANPs) have demonstrated that variations in the shape, size, and composition lead to distinct patterns in their immunostimulatory properties. While most of these ...
- Title
- Prevalence of alternative splicing choices in Arabidopsis thaliana
- Author
- Loraine, Ann, English, Adam C., Patel, Ketan S.
- Date Created
- 2010
- Subjects--Topical
- Gene expression, Nucleic acids
- Description
- Background: Around 14% of protein-coding genes of Arabidopsis thaliana genes from the TAIR9 genome release are annotated as producing multiple transcript variants through alternative splicing. However, for most alternatively spliced genes in Arabi...
- Title
- Retinoic acid inducible gene-I mediated detection of bacterial nucleic acids in human microglial cells
- Author
- Afonin, Kirill A., Marriott, Ian, Halman, Justin
- Date Created
- 2020
- Subjects--Topical
- Nucleic acids, Chemistry
- Description
- Background Bacterial meningitis and meningoencephalitis are associated with devastating neuroinflammation. We and others have demonstrated the importance of glial cells in the initiation of immune responses to pathogens invading the central nervou...
- Title
- Smart-responsive nucleic acid nanoparticles (NANPs) with the potential to modulate immune behavior
- Author
- Afonin, Kirill A., Chandler, Morgan
- Date Created
- 2019
- Subjects--Topical
- Nucleic acids, Chemistry
- Description
- Nucleic acids are programmable and biocompatible polymers that have beneficial uses in nanotechnology with broad applications in biosensing and therapeutics. In some cases, however, the development of the latter has been impeded by the unknown imm...
- Title
- Special issue nanotechnology to overcome the world's most critical health issues: liposomes and beyond-a themed issue dedicated to Professor Yechezkel Barenholz
- Author
- Afonin, Kirill A., Dobrovolskaia, Marina
- Date Created
- 2023
- Subjects--Topical
- Nucleic acids, Chemistry