Search results
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Title
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Analysis of pollen-specific alternative splicing in Arabidopsis thaliana via semi-quantitative PCR
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Author
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Loraine, Ann, Estrada, April, Freese, Nowlan H., Blakley, Ivory
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Date Created
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2015
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Subjects--Topical
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Bioinformatics, Pollen, Nucleic acids
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Description
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Alternative splicing enables a single gene to produce multiple mRNA isoforms by varying splice site selection. In animals, alternative splicing of mRNA isoforms between cell types is widespread and supports cellular differentiation. In plants, at ...
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Title
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Arabidopsis bioinformatics resources : the current state, challenges, and priorities for the future
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Author
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Loraine, Ann, Doherty, Colleen, Friesner, Joanna, Gregory, Brian
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Date Created
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2019
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Subjects--Topical
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Bioinformatics, Arabidopsis thaliana
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Description
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Effective research, education, and outreach efforts by the Arabidopsis thaliana community, as well as other scientific communities that depend on Arabidopsis resources, depend vitally on easily available and publicly-shared resources. These resour...
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Title
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Changes in Lysozyme flexibility upon mutation are frequent, large and long-ranged
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Author
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Jacobs, Donald J., Verma, Deeptak, Livesay, Dennis R.
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Date Created
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2012
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Subjects--Topical
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Bioinformatics, Statistics
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Description
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We investigate changes in human c-type lysozyme flexibility upon mutation via a Distance Constraint Model, which gives a statistical mechanical treatment of network rigidity. Specifically, two dynamical metrics are tracked. Changes in flexibility ...
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Title
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Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient
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Author
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Loraine, Ann, Yao, Jianchao, Chang, Chunqi, Roux, Stanley J.
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Date Created
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2008
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Subjects--Topical
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Genomics, Bioinformatics
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Description
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Background: Currently, clustering with some form of correlation coefficient as the gene similarity metric has become a popular method for profiling genomic data. The Pearson correlation coefficient and the standard deviation (SD)-weighted correlat...